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vtkAutoCorrelativeStatistics Class Reference

A class for univariate auto-correlative statistics. More...

#include <vtkAutoCorrelativeStatistics.h>

Inheritance diagram for vtkAutoCorrelativeStatistics:
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Collaboration diagram for vtkAutoCorrelativeStatistics:
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Public Types

typedef vtkStatisticsAlgorithm Superclass
 
- Public Types inherited from vtkStatisticsAlgorithm
typedef vtkTableAlgorithm Superclass
 
enum  InputPorts { INPUT_DATA = 0, LEARN_PARAMETERS = 1, INPUT_MODEL = 2 }
 
enum  OutputIndices { OUTPUT_DATA = 0, OUTPUT_MODEL = 1, ASSESSMENT = 2, OUTPUT_TEST = 2 }
 
- Public Types inherited from vtkTableAlgorithm
typedef vtkAlgorithm Superclass
 
- Public Types inherited from vtkAlgorithm
typedef vtkObject Superclass
 
enum  DesiredOutputPrecision { SINGLE_PRECISION, DOUBLE_PRECISION, DEFAULT_PRECISION }
 

Public Member Functions

virtual int IsA (const char *type)
 
vtkAutoCorrelativeStatisticsNewInstance () const
 
void PrintSelf (ostream &os, vtkIndent indent)
 
virtual void SetSliceCardinality (vtkIdType)
 
virtual vtkIdType GetSliceCardinality ()
 
virtual void Aggregate (vtkDataObjectCollection *, vtkMultiBlockDataSet *)
 
- Public Member Functions inherited from vtkStatisticsAlgorithm
vtkStatisticsAlgorithmNewInstance () const
 
void PrintSelf (ostream &os, vtkIndent indent)
 
virtual void SetColumnStatus (const char *namCol, int status)
 
virtual void ResetAllColumnStates ()
 
virtual int RequestSelectedColumns ()
 
virtual void ResetRequests ()
 
virtual vtkIdType GetNumberOfRequests ()
 
virtual vtkIdType GetNumberOfColumnsForRequest (vtkIdType request)
 
void AddColumn (const char *namCol)
 
void AddColumnPair (const char *namColX, const char *namColY)
 
virtual void SetLearnOptionParameterConnection (vtkAlgorithmOutput *params)
 
virtual void SetLearnOptionParameters (vtkDataObject *params)
 
virtual void SetInputModelConnection (vtkAlgorithmOutput *model)
 
virtual void SetInputModel (vtkDataObject *model)
 
virtual void SetLearnOption (bool)
 
virtual bool GetLearnOption ()
 
virtual void SetDeriveOption (bool)
 
virtual bool GetDeriveOption ()
 
virtual void SetAssessOption (bool)
 
virtual bool GetAssessOption ()
 
virtual void SetTestOption (bool)
 
virtual bool GetTestOption ()
 
virtual void SetNumberOfPrimaryTables (vtkIdType)
 
virtual vtkIdType GetNumberOfPrimaryTables ()
 
virtual void SetAssessNames (vtkStringArray *)
 
virtual vtkStringArray * GetAssessNames ()
 
virtual const char * GetColumnForRequest (vtkIdType r, vtkIdType c)
 
virtual int GetColumnForRequest (vtkIdType r, vtkIdType c, vtkStdString &columnName)
 
virtual bool SetParameter (const char *parameter, int index, vtkVariant value)
 
- Public Member Functions inherited from vtkTableAlgorithm
vtkTableAlgorithmNewInstance () const
 
void PrintSelf (ostream &os, vtkIndent indent)
 
virtual int ProcessRequest (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
 
vtkTableGetOutput ()
 
vtkTableGetOutput (int index)
 
void SetInputData (vtkDataObject *obj)
 
void SetInputData (int index, vtkDataObject *obj)
 
- Public Member Functions inherited from vtkAlgorithm
vtkAlgorithmNewInstance () const
 
void PrintSelf (ostream &os, vtkIndent indent)
 
int HasExecutive ()
 
vtkExecutiveGetExecutive ()
 
virtual void SetExecutive (vtkExecutive *executive)
 
virtual int ModifyRequest (vtkInformation *request, int when)
 
vtkInformation * GetInputPortInformation (int port)
 
vtkInformation * GetOutputPortInformation (int port)
 
int GetNumberOfInputPorts ()
 
int GetNumberOfOutputPorts ()
 
void UpdateProgress (double amount)
 
vtkInformation * GetInputArrayInformation (int idx)
 
void RemoveAllInputs ()
 
vtkDataObjectGetOutputDataObject (int port)
 
virtual void RemoveInputConnection (int port, vtkAlgorithmOutput *input)
 
virtual void RemoveInputConnection (int port, int idx)
 
virtual void RemoveAllInputConnections (int port)
 
int GetNumberOfInputConnections (int port)
 
int GetTotalNumberOfInputConnections ()
 
vtkAlgorithmOutputGetInputConnection (int port, int index)
 
vtkAlgorithmGetInputAlgorithm (int port, int index, int &algPort)
 
vtkAlgorithmGetInputAlgorithm (int port, int index)
 
vtkExecutiveGetInputExecutive (int port, int index)
 
vtkInformation * GetInputInformation (int port, int index)
 
vtkInformation * GetOutputInformation (int port)
 
virtual void UpdateInformation ()
 
virtual void PropagateUpdateExtent ()
 
virtual void UpdateWholeExtent ()
 
void ConvertTotalInputToPortConnection (int ind, int &port, int &conn)
 
virtual double ComputePriority ()
 
int SetUpdateExtentToWholeExtent (int port)
 
int SetUpdateExtentToWholeExtent ()
 
void SetUpdateExtent (int port, int extent[6])
 
int ProcessRequest (vtkInformation *request, vtkCollection *inInfo, vtkInformationVector *outInfo)
 
virtual int ComputePipelineMTime (vtkInformation *request, vtkInformationVector **inInfoVec, vtkInformationVector *outInfoVec, int requestFromOutputPort, unsigned long *mtime)
 
virtual vtkInformation * GetInformation ()
 
virtual void SetInformation (vtkInformation *)
 
virtual void Register (vtkObjectBase *o)
 
virtual void UnRegister (vtkObjectBase *o)
 
virtual void SetAbortExecute (int)
 
virtual int GetAbortExecute ()
 
virtual void AbortExecuteOn ()
 
virtual void AbortExecuteOff ()
 
virtual void SetProgress (double)
 
virtual double GetProgress ()
 
void SetProgressText (const char *ptext)
 
virtual char * GetProgressText ()
 
virtual unsigned long GetErrorCode ()
 
virtual void SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, const char *name)
 
virtual void SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, int fieldAttributeType)
 
virtual void SetInputArrayToProcess (int idx, vtkInformation *info)
 
virtual void SetInputArrayToProcess (int idx, int port, int connection, const char *fieldAssociation, const char *attributeTypeorName)
 
vtkDataObjectGetInputDataObject (int port, int connection)
 
virtual void SetInputConnection (int port, vtkAlgorithmOutput *input)
 
virtual void SetInputConnection (vtkAlgorithmOutput *input)
 
virtual void AddInputConnection (int port, vtkAlgorithmOutput *input)
 
virtual void AddInputConnection (vtkAlgorithmOutput *input)
 
virtual void SetInputDataObject (int port, vtkDataObject *data)
 
virtual void SetInputDataObject (vtkDataObject *data)
 
virtual void AddInputDataObject (int port, vtkDataObject *data)
 
virtual void AddInputDataObject (vtkDataObject *data)
 
vtkAlgorithmOutputGetOutputPort (int index)
 
vtkAlgorithmOutputGetOutputPort ()
 
vtkAlgorithmGetInputAlgorithm ()
 
vtkExecutiveGetInputExecutive ()
 
vtkInformation * GetInputInformation ()
 
virtual void Update (int port)
 
virtual void Update ()
 
virtual void SetReleaseDataFlag (int)
 
virtual int GetReleaseDataFlag ()
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
int UpdateExtentIsEmpty (vtkInformation *pinfo, vtkDataObject *output)
 
int UpdateExtentIsEmpty (vtkInformation *pinfo, int extentType)
 
void SetUpdateExtent (int port, int piece, int numPieces, int ghostLevel)
 
void SetUpdateExtent (int piece, int numPieces, int ghostLevel)
 
void SetUpdateExtent (int extent[6])
 
int * GetUpdateExtent ()
 
int * GetUpdateExtent (int port)
 
void GetUpdateExtent (int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)
 
void GetUpdateExtent (int port, int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)
 
void GetUpdateExtent (int extent[6])
 
void GetUpdateExtent (int port, int extent[6])
 
int GetUpdatePiece ()
 
int GetUpdatePiece (int port)
 
int GetUpdateNumberOfPieces ()
 
int GetUpdateNumberOfPieces (int port)
 
int GetUpdateGhostLevel ()
 
int GetUpdateGhostLevel (int port)
 

Static Public Member Functions

static int IsTypeOf (const char *type)
 
static
vtkAutoCorrelativeStatistics
SafeDownCast (vtkObjectBase *o)
 
static
vtkAutoCorrelativeStatistics
New ()
 
- Static Public Member Functions inherited from vtkStatisticsAlgorithm
static int IsTypeOf (const char *type)
 
static vtkStatisticsAlgorithmSafeDownCast (vtkObjectBase *o)
 
- Static Public Member Functions inherited from vtkTableAlgorithm
static vtkTableAlgorithmNew ()
 
static int IsTypeOf (const char *type)
 
static vtkTableAlgorithmSafeDownCast (vtkObjectBase *o)
 
- Static Public Member Functions inherited from vtkAlgorithm
static vtkAlgorithmNew ()
 
static int IsTypeOf (const char *type)
 
static vtkAlgorithmSafeDownCast (vtkObjectBase *o)
 
static void SetDefaultExecutivePrototype (vtkExecutive *proto)
 
static vtkInformationIntegerKey * INPUT_IS_OPTIONAL ()
 
static vtkInformationIntegerKey * INPUT_IS_REPEATABLE ()
 
static
vtkInformationInformationVectorKey * 
INPUT_REQUIRED_FIELDS ()
 
static
vtkInformationStringVectorKey * 
INPUT_REQUIRED_DATA_TYPE ()
 
static
vtkInformationInformationVectorKey * 
INPUT_ARRAYS_TO_PROCESS ()
 
static vtkInformationIntegerKey * INPUT_PORT ()
 
static vtkInformationIntegerKey * INPUT_CONNECTION ()
 
static vtkInformationIntegerKey * PRESERVES_DATASET ()
 
static vtkInformationIntegerKey * PRESERVES_GEOMETRY ()
 
static vtkInformationIntegerKey * PRESERVES_BOUNDS ()
 
static vtkInformationIntegerKey * PRESERVES_TOPOLOGY ()
 
static vtkInformationIntegerKey * PRESERVES_ATTRIBUTES ()
 
static vtkInformationIntegerKey * PRESERVES_RANGES ()
 
static vtkInformationIntegerKey * MANAGES_METAINFORMATION ()
 

Protected Member Functions

virtual vtkObjectBase * NewInstanceInternal () const
 
 vtkAutoCorrelativeStatistics ()
 
 ~vtkAutoCorrelativeStatistics ()
 
virtual void Derive (vtkMultiBlockDataSet *)
 
virtual vtkDoubleArray * CalculatePValues (vtkDoubleArray *)
 
virtual void Learn (vtkTable *, vtkTable *, vtkMultiBlockDataSet *)
 
virtual void Test (vtkTable *, vtkMultiBlockDataSet *, vtkTable *)
 
virtual void Assess (vtkTable *inData, vtkMultiBlockDataSet *inMeta, vtkTable *outData)
 
virtual void SelectAssessFunctor (vtkTable *outData, vtkDataObject *inMeta, vtkStringArray *rowNames, AssessFunctor *&dfunc)
 
- Protected Member Functions inherited from vtkStatisticsAlgorithm
 vtkStatisticsAlgorithm ()
 
 ~vtkStatisticsAlgorithm ()
 
virtual int FillInputPortInformation (int port, vtkInformation *info)
 
virtual int FillOutputPortInformation (int port, vtkInformation *info)
 
virtual int RequestData (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
 
void Assess (vtkTable *, vtkMultiBlockDataSet *, vtkTable *, int)
 
- Protected Member Functions inherited from vtkTableAlgorithm
 vtkTableAlgorithm ()
 
 ~vtkTableAlgorithm ()
 
virtual int RequestInformation (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector)
 
virtual int RequestUpdateExtent (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
 
- Protected Member Functions inherited from vtkAlgorithm
 vtkAlgorithm ()
 
 ~vtkAlgorithm ()
 
virtual void SetNumberOfInputPorts (int n)
 
virtual void SetNumberOfOutputPorts (int n)
 
int InputPortIndexInRange (int index, const char *action)
 
int OutputPortIndexInRange (int index, const char *action)
 
int GetInputArrayAssociation (int idx, vtkInformationVector **inputVector)
 
virtual vtkExecutiveCreateDefaultExecutive ()
 
virtual void ReportReferences (vtkGarbageCollector *)
 
virtual void SetNumberOfInputConnections (int port, int n)
 
int GetInputArrayAssociation (int idx, int connection, vtkInformationVector **inputVector)
 
int GetInputArrayAssociation (int idx, vtkDataObject *input)
 
vtkDataArray * GetInputArrayToProcess (int idx, vtkInformationVector **inputVector)
 
vtkDataArray * GetInputArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)
 
vtkDataArray * GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)
 
vtkDataArray * GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)
 
vtkDataArray * GetInputArrayToProcess (int idx, vtkDataObject *input)
 
vtkDataArray * GetInputArrayToProcess (int idx, vtkDataObject *input, int &association)
 
vtkAbstractArray * GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector)
 
vtkAbstractArray * GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)
 
vtkAbstractArray * GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)
 
vtkAbstractArray * GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)
 
vtkAbstractArray * GetInputAbstractArrayToProcess (int idx, vtkDataObject *input)
 
vtkAbstractArray * GetInputAbstractArrayToProcess (int idx, vtkDataObject *input, int &association)
 
vtkInformation * GetInputArrayFieldInformation (int idx, vtkInformationVector **inputVector)
 
virtual void SetNthInputConnection (int port, int index, vtkAlgorithmOutput *input)
 
void SetInputDataInternal (int port, vtkDataObject *input)
 
void AddInputDataInternal (int port, vtkDataObject *input)
 
virtual void SetErrorCode (unsigned long)
 

Protected Attributes

vtkIdType SliceCardinality
 
- Protected Attributes inherited from vtkStatisticsAlgorithm
int NumberOfPrimaryTables
 
bool LearnOption
 
bool DeriveOption
 
bool AssessOption
 
bool TestOption
 
vtkStringArray * AssessNames
 
vtkStatisticsAlgorithmPrivateInternals
 
- Protected Attributes inherited from vtkAlgorithm
vtkInformation * Information
 
double Progress
 
char * ProgressText
 
unsigned long ErrorCode
 

Additional Inherited Members

- Public Attributes inherited from vtkAlgorithm
int AbortExecute
 
- Static Protected Member Functions inherited from vtkAlgorithm
static vtkInformationIntegerKey * PORT_REQUIREMENTS_FILLED ()
 
- Static Protected Attributes inherited from vtkAlgorithm
static vtkExecutiveDefaultExecutivePrototype
 

Detailed Description

A class for univariate auto-correlative statistics.

Given a selection of columns of interest in an input data table, this class provides the following functionalities, depending on the chosen execution options: Learn: calculate sample mean and M2 aggregates for each variable w.r.t. itself (cf. P. Pebay, Formulas for robust, one-pass parallel computation of covariances and Arbitrary-Order Statistical Moments, Sandia Report SAND2008-6212, Sep 2008, http://infoserve.sandia.gov/sand_doc/2008/086212.pdf for details) for each specified time lag. Derive: calculate unbiased autocovariance matrix estimators and its determinant, linear regressions, and Pearson correlation coefficient, for each specified time lag. Assess: given an input data set, two means and a 2x2 covariance matrix, mark each datum with corresponding relative deviation (2-dimensional Mahlanobis distance).

Thanks:
This class was written by Philippe Pebay, Kitware SAS 2012
Tests:
vtkAutoCorrelativeStatistics (Tests)

Definition at line 54 of file vtkAutoCorrelativeStatistics.h.

Member Typedef Documentation

Definition at line 57 of file vtkAutoCorrelativeStatistics.h.

Constructor & Destructor Documentation

vtkAutoCorrelativeStatistics::vtkAutoCorrelativeStatistics ( )
protected
vtkAutoCorrelativeStatistics::~vtkAutoCorrelativeStatistics ( )
protected

Member Function Documentation

static int vtkAutoCorrelativeStatistics::IsTypeOf ( const char *  type)
static
virtual int vtkAutoCorrelativeStatistics::IsA ( const char *  type)
virtual

Reimplemented from vtkStatisticsAlgorithm.

Reimplemented in vtkPAutoCorrelativeStatistics.

static vtkAutoCorrelativeStatistics* vtkAutoCorrelativeStatistics::SafeDownCast ( vtkObjectBase *  o)
static
virtual vtkObjectBase* vtkAutoCorrelativeStatistics::NewInstanceInternal ( ) const
protectedvirtual

Reimplemented from vtkStatisticsAlgorithm.

Reimplemented in vtkPAutoCorrelativeStatistics.

vtkAutoCorrelativeStatistics* vtkAutoCorrelativeStatistics::NewInstance ( ) const
void vtkAutoCorrelativeStatistics::PrintSelf ( ostream &  os,
vtkIndent  indent 
)
static vtkAutoCorrelativeStatistics* vtkAutoCorrelativeStatistics::New ( )
static
virtual void vtkAutoCorrelativeStatistics::SetSliceCardinality ( vtkIdType  )
virtual

Set/get the cardinality of the data set at given time, i.e., of any given time slice. It cannot be negative. The input data set is assumed to have a cardinality which is a multiple of this value. The default is 0, meaning that the user must specify a value that is consistent with the input data set.

virtual vtkIdType vtkAutoCorrelativeStatistics::GetSliceCardinality ( )
virtual

Set/get the cardinality of the data set at given time, i.e., of any given time slice. It cannot be negative. The input data set is assumed to have a cardinality which is a multiple of this value. The default is 0, meaning that the user must specify a value that is consistent with the input data set.

virtual void vtkAutoCorrelativeStatistics::Aggregate ( vtkDataObjectCollection ,
vtkMultiBlockDataSet  
)
virtual

Given a collection of models, calculate aggregate model

Implements vtkStatisticsAlgorithm.

virtual void vtkAutoCorrelativeStatistics::Learn ( vtkTable ,
vtkTable ,
vtkMultiBlockDataSet  
)
protectedvirtual

Execute the calculations required by the Learn option, given some input Data NB: input parameters are unused.

Implements vtkStatisticsAlgorithm.

Reimplemented in vtkPAutoCorrelativeStatistics.

virtual void vtkAutoCorrelativeStatistics::Derive ( vtkMultiBlockDataSet )
protectedvirtual

Execute the calculations required by the Derive option.

Implements vtkStatisticsAlgorithm.

virtual void vtkAutoCorrelativeStatistics::Test ( vtkTable ,
vtkMultiBlockDataSet ,
vtkTable  
)
inlineprotectedvirtual

Execute the calculations required by the Test option.

Implements vtkStatisticsAlgorithm.

Reimplemented in vtkPAutoCorrelativeStatistics.

Definition at line 94 of file vtkAutoCorrelativeStatistics.h.

virtual void vtkAutoCorrelativeStatistics::Assess ( vtkTable inData,
vtkMultiBlockDataSet inMeta,
vtkTable outData 
)
inlineprotectedvirtual

Execute the calculations required by the Assess option.

Implements vtkStatisticsAlgorithm.

Definition at line 101 of file vtkAutoCorrelativeStatistics.h.

virtual vtkDoubleArray* vtkAutoCorrelativeStatistics::CalculatePValues ( vtkDoubleArray *  )
protectedvirtual

Calculate p-value. This will be overridden using the object factory with an R implementation if R is present.

virtual void vtkAutoCorrelativeStatistics::SelectAssessFunctor ( vtkTable outData,
vtkDataObject inMeta,
vtkStringArray *  rowNames,
AssessFunctor *&  dfunc 
)
protectedvirtual

Provide the appropriate assessment functor.

Implements vtkStatisticsAlgorithm.

Member Data Documentation

vtkIdType vtkAutoCorrelativeStatistics::SliceCardinality
protected

Definition at line 121 of file vtkAutoCorrelativeStatistics.h.


The documentation for this class was generated from the following file: